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于洋
北京 | 化学与化工学院 | 特别研究员
  邮箱   yang_yu@outlook.com 
TA的实验室:   金属蛋白设计研究组
论文

基于肌红蛋白的氧激活蛋白的理性设计

金属酶催化了生命活动及工业催化中的很多重要反应。天然金属酶的研究往往受限于蛋白质本身结构复杂、表达纯化困难等问题。通过理性设计,可以在分子量小、结构简单、易于表达的骨架蛋白中模拟天然金属酶的结构、光谱和功能,构建人工金属酶。人工酶可以为天然酶的机制研究提供新的平台。本文中,笔者探讨以肌红蛋白为骨架蛋白,通过结构特征的模拟、非天然氨基酸的引入等手段,模拟氧激活蛋白,尤其是氧化酶。综述以对理性设计得到的人工氧化酶的反应中间体进行研究的进展,发现金属酶活性中心的酪氨酸作为催化反应的关键残基,对于氧化反应的调控非常重要; 而在小分子量骨架蛋白中模拟天然金属酶是一种人工金属酶分子设计的方法,可以用于研究血红素酶外的其他金属酶。

期刊: 生物加工过程  2019
作者: 于洋

Expansion of Redox Chemistry in Designer Metalloenzymes

期刊: Accounts of Chemical Research  2019
作者: Jiangyun Wang,Xiaohong Liu,Yang Yu
DOI:10.1021/acs.accounts.8b00627

Artificial Metalloenzyme Design with Unnatural Amino Acids and Non-Native Cofactors

期刊: ACS Catalysis  2018
作者: Jiangyun Wang,Lin Xia,Cheng Hu,Yang Yu
DOI:10.1021/acscatal.7b03754

A genetically engineered Escherichia coli that senses and degrades tetracycline antibiotic residue

期刊: Synthetic and Systems Biotechnology  2018
作者: Jiangyun Wang,Yang Yu,Chunbo Lou,Sha Wei,Hua Li,Cheng Hu,Xiaohong Liu,Qingyang Tan,Yueren Jiang,Yushan Liu,Yongming Li,Yiqun Dang,Boyi Wang,Yajin Mo,Ye Liu,Ruiling Cai,Jianyi Huang,Yue Xu,Wenbo Wang,Ye Yang,Zhuoning Zou,Zepeng Mu
DOI:10.1016/j.synbio.2018.05.001

Engineering the metal-binding loop at a type 1 copper center by circular permutation

Circular permutation of the cupredoxin azurin creates a break on the metal binding loop, highlighting the loop's flexibility.

期刊: RSC Advances  2017
作者: Jiangyun Wang,Yang Yu,Haiping Liu,Aiping Huang,Tongtong Zhang,Binbin Su,Honghui Chen
DOI:10.1039/c7ra11512a

Improving artificial metalloenzymes' activity by optimizing electron transfer

This feature article discusses the strategies to optimize electron transfer efficiency, towards enhancing the activity of artificial metalloenzymes.

期刊: Chemical Communications  2017
作者: Jiangyun Wang,Yang Yu,Cheng Hu
DOI:10.1039/c6cc09921a

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin

期刊: Protein Science  2016
作者: Yi Lu,Ninian J. Blackburn,Honghui Chen,Parisa Hosseinzadeh,Kelly N. Chacón,Igor D. Petrik,Yang Yu
DOI:10.1002/pro.3071

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

期刊: Science China Chemistry  2016
作者: Yi Lu,Jiangyun Wang,Chang Cui,Yang Yu
DOI:10.1007/s11426-016-0343-2

Ultrafast Photoinduced Electron Transfer in Green Fluorescent Protein Bearing a Genetically Encoded Electron Acceptor

期刊: Journal of the American Chemical Society  2015
作者: Jiangyun Wang,Andong Xia,Weimin Gong,Peng Zheng,Kai Deng,Xiaohong Liu,Jiasong Li,Feng Gao,Cheng Hu,Meng Zhou,Yang Yu,Xiaoxuan Lv
DOI:10.1021/jacs.5b03652

Significant improvement of oxidase activity through the genetic incorporation of a redox-active unnatural amino acid

Incorporation of 3-methoxytyrosine boosts the oxidase activity of the myoglobin model of oxidase, stressing the importance of the redox potential tuning of tyrosine.

期刊: Chemical Science  2015
作者: Jiangyun Wang,Yi Lu,Weimin Gong,Feng Gao,Han Li,Hanlin Ouyang,Xiaoxuan Lv,Jiasong Li,Jianshu Dong,Meirong Hu,Wei Zhang,Xiaohong Liu,Li Wang,Qing Zhou,Yang Yu
DOI:10.1039/c5sc01126d

Defining the Role of Tyrosine and Rational Tuning of Oxidase Activity by Genetic Incorporation of Unnatural Tyrosine Analogs

期刊: Journal of the American Chemical Society  2015
作者: Yi Lu,Jiangyun Wang,Mark J. Nilges,Arnab Mukherjee,Parisa Hosseinzadeh,Chang Cui,Qing Zhou,Jiasong Li,Xiaoxuan Lv,Yang Yu
DOI:10.1021/ja5109936

A Designed Metalloenzyme Achieving the Catalytic Rate of a Native Enzyme

期刊: Journal of the American Chemical Society  2015
作者: Yi Lu,Jiangyun Wang,Igor D. Petrik,Xiaohong Liu,Chang Cui,Yang Yu
DOI:10.1021/jacs.5b07119

Direct EPR Observation of a Tyrosyl Radical in a Functional Oxidase Model in Myoglobin during both H2O2and O2Reactions

期刊: Journal of the American Chemical Society  2014
作者: Yi Lu,Kyle D. Miner,Parisa Hosseinzadeh,Mark J. Nilges,Arnab Mukherjee,Yang Yu
DOI:10.1021/ja4091885

Metalloproteins Containing Cytochrome, Iron–Sulfur, or Copper Redox Centers

期刊: Chemical Reviews  2014
作者: Yi Lu,Ambika Bhagi,Igor Petrik,Shiliang Tian,Yang Yu,Parisa Hosseinzadeh,Saumen Chakraborty,Jing Liu
DOI:10.1021/cr400479b

Significant Enhancement of hPrx1 Chaperone Activity through Lysine Acetylation

期刊: ChemBioChem  2014
作者: Jiangyun Wang,Yang Yu,Jing-Hua Jin,Yanchao Pan
DOI:10.1002/cbic.201402164

Significant Increase of Oxidase Activity through the Genetic Incorporation of a Tyrosine-Histidine Cross-Link in a Myoglobin Model of Heme-Copper Oxidase

期刊: Angewandte Chemie  2012
作者: Jiangyun Wang,Yi Lu,Wei Zhang,Cheng Hu,Yang Yu,Xiaohong Liu
DOI:10.1002/ange.201108756

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